Plant Pathogenic Fungi and Oomycetes

1. Quantifying Re-association of a Facultative Endohyphal Bacterium with a Filamentous Fungus David A. Baltrus, Joseph Spraker, and A. Elizabeth Arnold 2. Characterizing MycovirusesMahtab Peyambari and Marilyn J. Roossinck 3. Analysis of Secondary Metabolites from Plant Endophytic Fungi Jiajia Liu and Gang Liu 4. Protocols for Investigating the Leaf Mycobiome using High throughput DNA SequencingShawn P. Brown, Devin R. Leopold, and Posy E. Busby 5. Characterizing Small RNAs in Filamentous Fungi using the Rice Blast Fungus, Magnaporthe oryzae, as an ExampleRaman Vidhyavathi, Meyers Blake C., Dean Ralph A., and Donofrio Nicole M.  6. Plant Small RNAs Responsive to Fungal Pathogen Infection Yun Jin and Hui-Shan Guo 7. Sequential Phosphopeptide Enrichment for phosphoproteome Analysis of Filamentous Fungi: A Test Case using Magnaporthe oryzaeYeonyee Oh, William L. Franck, and Ralph A. Dean 8. Assays for MAP kinase Activation in Magnaporthe oryzae and other Plant Pathogenic FungiXue Zhang, Zhuyun Bian, and Jin-Rong Xu 9. Visualizing the Movement of Magnaporthe oryzae Effector Proteins in Rice Cells during Infection Kiersun Jones and Chang Hyun Khang 10. Illuminating Phytophthora Biology with Fluorescent Protein TagsAudrey M.V. Ah-Fong, Meenakshi Kagda, and Howard S. Judelson 11. Methods for Transient Gene Expression in Wild Relatives of PotatoSidrat Abdullahand Dennis Halterman 12. Host-induced Gene Silencing (HIGS) for Elucidating Puccinia Gene Function in WheatChuntao Yin and Scot Hulbert 13. From Short Reads to Chromosome-scale Genome AssembliesKyle Fletcher and Richard Michelmore14. BLASTmap: A Shiny-based Application to Visualise BLAST Results as Interactive Heat Maps and a Tool to Design Gene Specific Baits for Bespoke Target Enrichment Sequencing Katie Baker, Gordon Stephen, Shona Strachan, Miles Armstrong, and Ingo Hein 15. A Computational Protocol to Analyze Meta-transcriptomic Data Capturing Fungal-host InteractionsYong Zhang, Li Guo, and Li-Jun Ma 16. Application of the Cre/lox System to Construct Auxotrophic Markers for Quantitative Genetic Analyses in Fusarium graminearumLanelle R. Connolly, Allyson A. Erlendson, Corinne M. Fargo, Kendra K. Jackson, Morgan M.G. Pelker, Jacob W. Mazzola, Mark S. Geisler, and Michael Freitag 17. Protocol of Phytophthora capsici Transformation using the CRISPR-Cas9 SystemZhiwen Wang, Brett M. Tyler, and Xili Liu 18. Generating Gene Silenced Mutants in Phytophthora sojaeYao Zhao, Yufei Li, Min Qiu, Wenbo Ma,and  Yuanchao Wang ... Mehr