Preface...Table of Contents...Contributing Authors...1. Bisulfite Sequencing of RNA for Transcriptome-Wide Detection of 5-MethylcytosineLukas Trixl, Dietmar Rieder, Thomas Amort, and Alexandra Lusser2. Single-Molecule Analysis of RNA Dynamics in Living Cells Using Molecular BeaconsMingming Chen, Shiqi Mao, Xiaotian Wu, Zhao Ma, Yantao Yang, Christopher J. Krueger, and Antony K. Chen3. Visualization of Xist Long Non-Coding RNA with Fluorescent CRISPR/CAS9 SystemUrszula Wasko, Zeming Zheng, and Sanchita Bhatnagar4. HAMR: High-Throughput Annotation of Modified RibonucleotidesLee E. Vandivier, Zachary D. Anderson, and Brian D. Gregory5. High-Resolution Mapping of N6-Methyladenosine Using m6A Crosslinking Immunoprecipitation Sequencing (m6A-CLIP-seq)Phillip J. Hsu and Chuan He6. Direct Chemical Biotinylation of RNA 5'-Ends Using a Diazo ReagentGreggory M. Rice, Razvan Nutiu, and Christian M. Gampe7. Identification of Methylated Transcripts Using the TRIBE ApproachLina Worpenberg, Tobias Jakobi, Christoph Dieterich, and Jean-Yves Roignant8. Decoding the Atlas of RNA Modifications from Epitranscriptome Sequencing DataXiao-qin Zhang and Jian-hua Yang9. Detection of MicroRNA-Mediated Target mRNA Cleavage and 3'-Uridylation in Human Cells by a SLA-RT-PCR AnalysisJing Lin and Lin Ji10. Genome-Wide Annotation of circRNAs and Their Alternative Back-Splicing/Splicing with CIRCexplorer PipelineRui Dong, Xu-Kai Ma, Ling-Ling Chen, and Li Yang11. Synthesis and Evaluation of Novel Neamine-Nucleoside Conjugates as Potential Antibiotic Targets for Escherichia coli 16S Ribosomal RNAZhen-Jun Yang, Maria-Grazia Concilio, Vasudevan Ramesh, and Li-He Zhang12. Electron Microscope Detection of 5-Methylcytosine on DNA and RNAIrene Masiello and Marco Biggiogera13. Immuno-Northern Blotting: Detection of Modified RNA Using Gel Separation and Antibodies to Modified NucleosidesEikan Mishima and Takaaki Abe14. LncVar Deciphering Genetic Variations Associated with Long Non-Coding GenesXiaowei Chen, Yajing Hao, Ya Cui, Zhen Fan, and Runsheng Chen15. Guided Reconstruction of Full-Length Isoforms from Short Reads by CIDANESandro Andreotti and Stefan Canzar16. Profiling of N6-Methyladenosine in Zika Virus RNA and Host Cellular mRNAGianluigi Lichinchi and Tariq M. Rana17. Detection and Quantification of Pseudouridine in RNAHironori Adachi, Meemanage D. DeZoysa, and Yi-Tao Yu18. 5-Methylcytosine Analysis by RNA-BisSeqYu-Sheng Chen, Hai-Li Ma, Ying Yang, Wei-Yi Lai, Bao-Fa Sun, and Yun-Gui Yang19. RNA Modification Regulatory Genes in DNA DamageRadoslav Janostiak and Narendra Wajapeyee20. Dot Blot Analysis for Measuring Global N6-Methyladenosine Modification of RNAArvindhan Nagarajan, Radoslav Janostiak, and Narendra Wajapeyee... Mehr
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