Computational Biology

1. Sequencing and Genome Assembly Using Next-Generation TechnologiesNiranjan Nagarajan and Mihai Pop2. RNA Structure PredictionIstván Miklós3. Normalization of Gene-Expression Microarray DataStefano Calza and Yudi Pawitan4. Prediction of Transmembrane Topology and Signal Peptide Given a Proteins Amino Acid SequenceLukas Käll5. Protein Structure ModelingLars Malmström and David R. Goodlett6. Template-Based Protein Structure ModelingAndras Fiser7. Automated Protein NMR Structure Determination in SolutionWolfram Gronwald and Hans Robert Kalbitzer8. Computational Tools in Protein CrystallographyDeepti Jain and Valerie Lamour9. 3-D Structures of Macromolecules Using Single Particle Analysis in EMANSteven J. Ludtke10. Computational Design of Chimeric Protein Libraries for Directed EvolutionJonathan J. Silberg, Peter Q. Nguyen, and Taylor Stevenson11. Mass Spectrometric Protein Identification Using the Global Proteome MachineDavid Fenyö, Jan Eriksson, and Ronald Beavis12. Unbiased Detection of Post Translational Modifications Using Mass SpectrometryMaria Fälth Savitski and Mikhail M. Savitski13. Protein Quantitation Using Mass SpectrometryGuoan Zhang, Beatrix M. Ueberheide, Sofia Waldemarson, Sunnie Myung, Kelly Molloy, Jan Eriksson, Brian T. Chait, Thomas A. Neubert, and David Fenyö14. Modeling Experimental Design for ProteomicsJan Eriksson and David Fenyö15. A Functional Proteomic Study of the Trypanosoma brucei Nuclear Pore Complex: An Informatic StrategyJeffrey A. DeGrasse and Damien Devos16. Inference of Signal Transduction Networks from Double Causal EvidenceRéka Albert, Bhaskar DasGupta, and Eduardo Sontag17. Reverse Engineering Gene Regulatory Networks Related to Quorum Sensing in the Plant Pathogen Pectobacterium atrosepticumKuang Lin, Dirk Husmeier, Frank Dondelinger, Claus D. Mayer, Hui Liu, Leighton Pritchard, George P.C. Salmond, Ian K. Toth, and Paul R.J. Birch18. ParameterInference and Model Selection in Signaling Pathway ModelsTina Toni and Michael P.H. Stumpf19. Genetic Algorithms and Their Application to In silico Evolution of Genetic Regulatory NetworksJohannes F. Knabe, Katja Wegner, Chrystopher L. Nehaniv, and Maria J. Schilstra... Mehr