Engineering and Analyzing Multicellular Systems

Part I: Constructing Multicellular Systems1. Recent Progress in Engineering Human-associated MicrobiomesStephanie J. Yaung, George M. Church, Harris H. Wang2. Constructing Synthetic Microbial Communities to Explore the Ecology and Evolution of SymbiosisAdam James Waite and Wenying Shou3. Combining Engineering and Evolution to Create Novel Metabolic Mutualisms Between SpeciesLon Chubiz, Sarah Douglas, and William Harcombe4. Design, Construction, and Characterization Methodologies for Synthetic Microbial ConsortiaHans C. Bernstein and Ross P. Carlson 5. An Observation Method for Autonomous Signaling-mediated Synthetic Diversification in Escherichia coliRyoji Sekine, Shotaro Ayukawa, and Daisuke Kiga6. Integration-free Reprogramming of Somatic Cells to Induced Pluripotent Stem Cells (iPSCs) without Viral Vectors, Recombinant DNA and Genetic ModificationBoon Chin HENGand Martin FUSSENEGGER7. Transformation of Bacillus subtilisXiao-Zhou Zhang, Chun You and Y.-H. Percival Zhang8. Culturing Anaerobes to use as a Model System for Studying the Evolution of Syntrophic MutualismSujung Lim, Sergey Syolyar, Kristina Hillesland9. Therapeutic Microbes for Infectious DiseaseChoon Kit Wong, Mui Hua Tan, Bahareh Haji Rasouliha, In Young Hwang, Hua Ling, Chueh Loo Poh, and Matthew Wook ChangPart II: Analyzing and Modeling Multicellular Systems10. Quantitative Measurement and Analysis in a Synthetic Pattern Formation Multicellular SystemXiongfei Fu and Wei Huang11. Transcriptome Analysis of a Microbial Coculture in which the Cell Populations are Separated by a MembraneKazufumi Hosoda, Naoaki Ono, Shingo Suzuki, and Tetsuya Yomo12. Identification of Mutations in Laboratory Evolved Microbes from Next-generation Sequencing data using breseqDaniel E. Deatherage and Jeffrey E. Barrick13. 3D-Fluorescence in situ Hybridization of Intact, Anaerobic BiofilmKristen A. Brileya, Laura B. Camilleri, and Matthew W. Fields14. The Characterization of Living Bacterial Colonies Using Nanospray Desorption Electrospray Ionization Mass SpectrometryBrandi S. Heath, Matthew J. Marshall, Julia Laskin15. Modeling Community Population Dynamics with the Open-Source Language RRobin Green and Wenying Shou16. Simulating Microbial Community Patterning using BiocellionSeunghwa Kang, Simon Kahan, Babak Momeni... Mehr